Description of Research

Programs & Software

Useful Resources

James Group



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Useful NMR Resources


Structure Databases
Display and Graphics
Nucleic Acids
Proteins
Meetings
Other NMR Research Groups
Commercial NMR Sites
Stable Isotopes


Structure Databases

Display and Graphics

  • UCSF Chimera

  • Rasmol & Chime RasMol is free software for looking at molecular structures. Chime shows molecules inside a web page, freeware for Mac, PC and SGI

Nucleic Acids

  • Curves Helical Analysis of Irregular Nucleic Acids, by R. Lavery and H. Sklenar

  • mfold The mfold web server to predict RNA folding, by M. Zuker

  • Rnadraw RNA drawing and analysis tools, for MS Windows

  • RNA World A comprehensive RNA site at Friedrich Schiller University Jena. Many links for programs, structural and sequence databases.

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Proteins

  • EMBL:the PredictProtein server generate multiple sequence alignments, secondary structure, residue solvent accessibility, transmembrane helices, topology for transmembrane proteins, and fold recognition.

  • ExPASy THE molecular biology server: Swiss Prot, Prosite, Enzyme, CD40Lbase, and Seqence Analysis bibliographic reference database

  • PROWL - Skirball Databases on peptides, nucleic acids and carbohydrates. Calculators for molecular weights. Tending towards use for mass spectroscopy. Also and entry point for many web resources.

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Links to NMR Resources

Meetings

NMR Research Groups

Commercial NMR Sites

Stable Isotopes