Useful NMR Resources

• Reserach Collaboratory for Structural Bioinformatics (PDB)

• DNA Binding Proteins

• Nucleic Acids

• Collaborative Resource for Structural Genomics

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• PDB3D: Realtime 3D Molecule Renderer for the WWW running as interpreted Java

• PDB to VRML converter

• Proteins in VRML Virtual Reality Modeling language

• Rasmol & Chime RasMol is free software for looking at molecular structures. Chime shows molecules inside a web page, freeware for Mac, PC and SGI

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• ICGEBnet DNA tools This server calculates various parameters from DNA sequences and plots them. Three programs: plot.it, bend.it, curve.it.

• Curves Helical Analysis of Irregular Nucleic Acids, by R. Lavery and H. Sklenar

• mfold Interactive server to predict RNA folding, by M. Zuker

• RNA the journal of the RNA Society

• Rnadraw RNA drawing and analysis tools, for MS Windows

• RNA World the most comprehensive RNA site, at IMB Jena. Many links for programs, structural and sequence databases.

• SCOP: Nucleic Acids Structural Classification of Proteins classifies nucleic acids too. Each entry can be viewed in VRML or RasMol.

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• Baylor College of Medicine Search Launcher Starting point for sequence and pattern searches, alignments and secondary structure predition

• Biotech Validation Suite for Protein Structures just upload your coordinates to have your structure checked by PROCHECK, SurVol, and WhatIf

• EMBL:the PredictProtein server generate multiple sequence alignments, secondary structure, residue solvent accessibility, transmembrane helices, topology for transmembrane proteins, and fold recognition.

• ExPASy THE molecular biology server: Swiss Prot, Prosite, Enzyme, CD40Lbase, and Seqence Analysis bibliographic reference database

• NOAMI NAOMI is a computer program system for studying, manipulating and predicting features and properties of three-dimensional protein structures. It runs only on Silicon Graphics SGI compuer systems. by S. Brocklehurst. Employs fuzzy logic to define elements of structure, and other novel algorithms.

• Protein Motions Database Protein motions can be viewed in VRML or as a movie. Movies are either CPK, stick, or ribbon and in stereo. Great site.

• Protein Society The journal Protein Science here, also kinemages and registration for the Protein Society meeting.

• PROWL - Skirball Databases on peptides, nucleic acids and carbohydrates. Calculators for molecular weights. Tending towards use for mass spectroscopy. Also and entry point for many web resources.

• Univ College London Biochemistry Biomolecular Structure Group Protein Structure Analysis, Sequence Analysis, Structure Classification (CATH)

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Links to NMR Resources

• A list of NMR meetings from the National Magnet Lab in Florida
• Stable isotope aided NMR of Biomolecules
• Keystone Symposia
• Experimental NMR Conference

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• Lewis Kay's Group Lewis's Pulse Sequences available here!
• Walter Chazin's Group at Scripps Lots of useful NMR info here, including multidimensional baseline correction.
• Brian Sykes' Group home of protein structure analysis program VADAR, NMR simulation MacNMR, and sequence analysis SEQSEE
• Univ Texas NMR CENTER MORASS, GRASP
• The Rowland Institute- Has the program Vince which generates noe connectivity diagrams and CSI diagrams, publication ready.
• National Magnet Laboratory, Florida
• International NMR Resource
• BioMagResBank at Madison Wisconsin
• Gaetano Montelione's Varian seqlib and parlib directories
• Wüthrich Group, ETH Zürich
• Bijvoet Center for Biomolecular NMR, Utrecht University

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• Bruker NMR Useful info like how to do a Helium fill.
• Varian NMR Magnetic Moments
• Acorn NMR This site has lots of useful tech info.
• MR Resources

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• Tritium Labeling Facility
• Los Alamos, National Stable Isotope Resource
• Martek--Suraj is here!
• Isotec--has catalogs in pdf format
• Cambridge Isotope Lab
• Web-Elements, interactive periodic table

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